Software Updates

2024-03 Julia 1.10.2, MUSTANG 3.2.4, ANMR (ENSO) 2.0.2
2024-02 ORCA 5.0.4, CENSO 1.2.0, Prokka 1.1.6
2024-01 Julia 1.10.0, Mathematica 14.0.0, SRA Tools (fastq) 3.0.10

2023-12 Intel oneAPI 2024.0 (Compiler, MKL, IPMI), CREST 2.12
2023-10 Matlab 2023b, Elasticsearch 8.10.0
2023-09 Mathematica 13.3.1, CMake 3.27.4, Neovim 0.9.2
2023-07 kwant 1.4.3, R 4.3.1
2023-06 LLVM 16.0.6, OBITools 4.0.3, Mathemartica 13.3.0
2023-05 Julia 1.9.0
2023-04 GCC 13.1.0, LLVM 16.0.0, Matlab 2023a, Alphafold 2.3.2
2023-03 Intel MPI 2021.8.0, MKL 2023.0.0, IPP 2021.7.0, TBB 2021.8.0, structure-factor 2.2.1
2023-02 Mathematica 13.2.1, EnTAP 0.10.8-beta
2023-01 Blender 3.4.1, Julia 1.8.5, RSEM 1.3.3, GSL 2.7, LLVM 15.0.7, GROMACS 2022.4, clinker 0.0.27, DIAMOND 2.1.0, Transdecoder 5.7.0

2022-12 Mathematica 13.2, Julia 1.8.4
2022-10 Julia 1.8.2
2022-09 Matlab 2022b, GCC 12.2.0, LLVM 15.0.0, QIIME2 2021.11, MEME 5.4.1
2022-08 Beagle 3.1.2, Beast 2.6.7, MuMax³ 20220831(-ME)
2022-07 Mathematica 13.1.0, Julia 1.7.3 (including many packages), Spyder 5.3.1, Kaiju 1.9.0
2022-06 Ray/RLlib 1.13.0
2022-05 GCC 12.1.0, Python 3.10.4, pysam 0.19.0, mapDamage 2.2.1, MEGA 11.0.11, XPlor-NIH 3.4, Blender 3.1.2, cblaster 1.3.12
2022-04 LLVM 14.0.0, Julia 1.7.2, R 4.2.0, GCC 11.3
2022-03 Matlab 2022a, LAMMPS 29Sep21u2, OpenMPI 4.1.3, BLAST 2.13.0, miRDeep2 0.1.3
2022-02 COMSOL 6.0, Mathematica 13.0.1, FFTW 3.3.10, GTDB-Tk 1.7.0, CAFE5 5.0
2022-01 Julia 1.6.5+1.7.1, LAMMPS 29Oct20, Spirit 2.1.1, Alphafold 2.1.1

2021-12 Mathematica 13.0.0
2021-11 OpenMPI 4.1.2, Tensorflow (-GPU) 2.6/2.4, CND 2017.11.30, Numba 0.54.1, Cactus 2.0.4, MafFilter 1.3.1
2021-10 Matlab 2021b, LLVM 13.0.0, Julia 1.6.3, TRNG 4.24, VVenC 1.1.0, Qiskit 0.30.1, Morpheus 2.2.5
2021-09 LLVM 12.0.1, GCC 9.4 + 11.2, MKL 2021.3.0, Intel MPI 2021.3.0, Ovito 3.5.4, minimap2 2.22, svim 1.4.2, svim-asm 1.0.2, NVIDIA HPC SDK 21.9 (including CUDA 11.4 + PGI compiler)
2021-08 Julia 1.6.2, FFTW 3.3.9, OpenMX 3.9.5, Gascoigne3d 20210105, tetrad 0.9.13
2021-07 Mathematica 12.3.1, ipyrad 0.9.81
2021-06 R 4.1.0, OpenMPI 4.0.6, ANTs 2.3.5+20210608, HiCExplorer 3.6, mlrose 1.3.0, Seqtk 20210622
2021-05 Mathematica 12.3, DRAM 1.2.3, Long Ranger 2.2.2, CcpNmr 3.0.4, SnpEff 5.0e
2021-04 GCC 10.3+11.1, LLVM 12.0.0, Python 3.8.9, Cython 0.29.23, Boost 1.75.0, AEM-3D 533, Pilon 1.24, Octopus (bio) 0.7.2, ngsLCA 1.0.0, Metadamage 0.4.5, MIDAS 1.3.2, inStrain 1.5.3, SAP 2021-04-20
2021-03 Matlab 2021a, R 4.0.4, GSL 2.6, LLVM (clang,flang) 11.1.0, glactools, Mercury 2020.3.0, Ovito (base) 3.4.4, metaSNV 1.0.3
2021-02 Julia 1.5.3, AEM3D 395, MetAnnotate 20210204
2021-01 R-4.0.3, NMRPipe 10.9, QIIME2-2020.11, Sumaclust 1.0.36, McCortex 20210108, UMI-tools 1.1.1, PartitionFinder 2.1.1

2020-12 Intel 2020u4 (ICC,IFORT,MKL,IPP,TBB,IMPI), Mathematica 12.2, OpenMPI 4.1.0, Spinach 2.5, SMRT Link 9.0, CCPN 3.0.3
2020-11 Originlab Origin 2021SR0, COMSOL 5.6, Eigen 3.3.8, AEM3D 371, bpp 4.3.0, CCS 5.0.0
2020-10 Matlab 2020b, LLVM/Clang 11.0.0, ObiTools 3.0.0-beta36, BEAST 2.6.3, wLogDate 1.0.2
2020-09 Gromacs 2020.3, LAMMPS 3Mar20, BLAST 2.10.1, kwant 1.4.2, SHAPEIT 2.r904, network-aware-bwa 0.5.10-evan.10, libbam 20200908, biohazard 2.2, NGSeXplore 0.1.5, MEGAN 6.19.8, samtools-patched 0.1.18-evan.8, ReadStat 1.1.4
2020-08 SAGE 8.9, Julia 1.5.0, OpenMPI 4.0.5, fastq-pair 1.0, SPAdes 3.14.1, fineSTRUCTURE 4.1.1
2020-07 GCC 10.2, R 4.0.2, Mathematica 12.1.1, AEM3D 353, IQTREE 2.0.6, Dsuite 20200728, ABYSS 2.2.4, aTRAM 2.3.1, Relate 1.1.2, Spinach 2.4.5157
2020-06 OpenMPI 4.0.4, Stacks 2.53, BWA 0.7.17, digit 20200617, PLINK 2.00a2.3
2020-05 Paraview 5.8.0, R 3.6.3+4.0.0, GCC 10.1, AEM-3D 347, Kraken 2.0.9beta, KAT 2.4.2
2020-04 Matlab 2020a, Phylobayes mpi1.8b, Krona 2.7.1
2020-03 GCC 9.3+8.4, Mathematica 12.1.0, CMake 3.16.5, OpenMPI 4.0.3+5.0.6+5.1.6, Julia 1.4.0, LLVM/Clang 10.0.0, AEM3D 344, fastsimcoal 2.6.0.3, Platanus(-allee) 2.2.2, Opera-LG 2.0.6
2020-02 CheckM 1.1.2, AEM3D 338, Obitools 3.0.0-beta10, g_fca 2.0, GTDB-Tk 1.0.2, IQ-TREE 1.6.2
2020-01 QIIME 2019.10, R 3.6.2 (+ more packages)

2019-12 Intel 2020 (ICC,IFORT,MKL,IPP,TBB,IMPI), Boost 1.71.0, Mothur 1.43.0, RaXML 8.2.12, SAMTools 1.10,ABINIT 8.10.3, Atompaw 4.1.0.6, QuantumEspresso 6.5, DDSCAT 7.3.3, Julia 1.3.0, MAFFT 7.453, FastTree 2.1.11, BUSCO 3.0.2, HMMER 3.3, Augustus 3.3.3, ELK 6.3.2
2019-11 Intel 2019u5 (ICC,IFORT,MKL,IPP,TBB,IMPI), GCC 7.5, Visit 3.0.2, RepeatModeler 2.0, OpenMPI 3.0.5+3.1.5, Kraken 2.0.8-beta, PAUP 4.0a166, BBMap 38.73, ORCA 4.2.1, Smoldyn 2.58, Hyde 0.4.3
2019-10 Geant 4.10.03, HTSeq 0.11.1, SWAN 41.31
2019-09 Matlab 2019b, LLVM/Clang 9.0.0, Julia 1.2.0, FastQC 0.11.8,Trimmomatic 0.39, Salmon 0.14.1, kallisto 0.46.0, Oyster River Protocol 2.2.8
2019-08 GCC 9.2, PGI 19.04, Oligotyping 2.1
2019-07 R 3.6.1, cutadapt 2.4, imblearn 0.5.0, fastrand 1.2.1, Supernova 2.1.1
2019-06 Elastix 4.9.0, vcflib 20190606, Perl 5.30.0, QIIME2-2019.4, BLAST 2.9.0, Bowtie2 2.3.5.1, Eigen 3.3.7, FGSL 1.2.0, Tensorflow 1.12.2, BerkeleyGW 2.0.0
2019-05 VMD 1.9.3, Trinity 2.8.4, GCC 9.1.0, Siesta 4.0.2, Questaal 20190501
2019-04 CMake 3.14.3,Mathematica 12.0.0, R 3.5.3, CCP4 7.0.072, Matlab 2019a
2019-03 CS-Rosetta 3.6, SimPy 3.0.11, Intel 2019u3 (ICC,IFORT,MKL,IPP,TBB,IMPI), SciPy 1.2.1, NumPy 1.16.2, Cython 0.29.6, Python 3.6.8, QIIME2-2019.1, Phonopy 2.1.1, LoReAn 2.0
2019-01 R 3.5.2, LLVM/Clang 7.0.1, PGI 18.10, Siesta 4.1-b4, OBITools 1.2.12, ecoPCR 1.0.0, ecoPrimers 0.4

2018-12-13 FreeBayes 1.2.0
2018-12-08 LAMMPS 16Mar18
2018-11-26 MultiQC 1.6
2018-11-23 RSEM 1.3.1, STAR 2.6.1d
2018-11-16 CMIX 16
2018-11-13 OpenMPI 4.0.0, Intel 2019u1 (ICC,IFORT,MKL,IPP,TBB,IMPI)
2018-10-30 Matlab 2018b, OpenMPI 3.0.3+3.1.3
2018-10-25 SciPy 1.1.0
2018-09-17 Intel 2019 (ICC,IFORT,MKL,IPP,TBB,IMPI), Julia 1.0.0
2018-09-13 FFTW 3.3.8, QuantumEspresso 6.3
2018-08-27 OpenMPI 2.1.5+3.1.2, STRUCTURE 2.3.4
2018-07-27 RepeatModeler 1.0.11
2018-07-18 CMIX 15
2018-07-12 Boost 1.67.0, Armadillo 8.600.0, GCC 7.3.0+8.1.0, PyTorch 0.4.0
2018-07-10 AEM3D 227
2018-07-06 Scikit-learn 0.19.1, Keras 2.2.0, tqdm 4.23.4, Seaborn 0.8.1
2018-07-04 R 3.5.1
2018-07-03 OpenMPI 3.1.1, AEM3D 223
2018-06-25 BEAGLE 2.5.0
2018-06-15 CS-Rosetta 3.5
2018-06-14 Intel (ICC, IFORT, MKL, IMPI, IPP, TBB) 2018u3
2018-06-11 QIIME 1.9.1
2018-06-07 QIIME2 2018.4
2018-05-18 PGI 18.4 (2018, MoviePy 0.2.3.4
2018-05-16 OBITools 1.2.11
2018-05-15 TensorFlow 1.8.0 (on all nodes)
2018-05-08 OpenMPI 3.1.0
2018-04-19 Matlab 2018a
2018-04-03 QuTiP 4.2.0
2018-03-15 TensorFlow 1.6.0 (@GPU)
2018-03-13 CUDA 9.1 & 9.0, LAMMS 31Mar17, Mathematica 11.3.0
2018-02-20 NumPy 1.14.0, SciPy 1.0.0, GPAW 1.3.0, ASE 1.15.0
2018-02-12 BamTools 2.5.1
2018-02-06 HF5 1.8.20, NetCDF 4.6.0
2018-01-29 GROMACS 2016.4+2018, BioPython 1.70, MPI4Py 3.0.0, NetworkX 1.11+2.1

2017-12-21 vcflib 20171221
2017-12-13 R 3.4.3, Julia 0.6.2
2017-12-05 OpenMPI 2.0.4, FFTW 3.3.7, Quantum Espresso 6.2
2017-11-20 Intel Compiler 2018u1, MKL 2018u1, IPP+TBB 2018u1, Intel MPI 2018u1
2017-11-16 AEM3D 175
2017-11-07 AEM3D 173, Beagle 2.1.2
2017-10-17 AEM3D 167
2017-10-12 HDF5 1.8.19, Siesta 4.0.1
2017-10-05 Exonerate 2.4.0
2017-09-28 Matlab 2017b, Cython 0.27, NumPy 1.13.2, SciPy 0.19.1
2017-09-27 Python 3.5.4, 3.6.2, CMIX 13
2017-09-15 Mathematica-11.2
2017-08-23 CS-Rosetta, Rosetta 3.8, NMRPipe
2017-07-07 vcftools 0.1.15
2017-06-30 Julia 0.6.0
2017-06-22 CPMD 4.1, Mothur 1.39.5
2017-06-20 GSL 2.4, Octopus 7.1, Avogadro 1.2.0
2017-06-02 OpenMPI 2.0.3+2.1.1, GCC 7.1
2017-04-27 Mathematica 11.1.1
2017-04-25 FALCON 1.8.7, Canu 1.5
2017-04-22 R 3.4.0
2017-03-29 LAMMPS 17Nov16, Matlab 2017a, Mathematica 11.1.0, OpenMPI 2.1.0, GSL 2.3, GROMACS 2016.3
2017-03-01 pypol 0.6
2017-02-23 PGI 16.10, Octopus 6.0 & 5.0.1
2017-02-19 OpenMPI 1.10.6, ASE 3.13.0, GPAW 1.2.0
2017-02-09 Lmfit 0.9.5, seaborn 0.7.1, iRep 1.10
2017-02-07 Mothur 1.39.1
2017-01-24 HMMER 3.1b2, Prodigal 2.6.3, pplacer 1.1.alpha19, Pysam 0.9.1.4, CheckM 1.0.7
2017-01-18 CD-HIT 4.6.6, ITK 4.8.2, Elastix 4.8, harminv 1.4, Bowtie2 2.3.0, FreeBayes 1.1.0
2017-01 All server and nodes updated to openSUSE Leap 42.2. All modules are recompiled for openSUSE 42.2.

2016-12-15 CUDA 8.0.44, Quantum Espresso 5.4.0, Mothur 1.38.1.1, VSEARCH 2.3.1, FALCON-integrate 1.7.7, OpenMX 3.8.1, Platanus 1.2.4
2016-11-04 PyMol 1.8.4.0, R 3.3.1, netcdf 4.4.1, gnuplot 5.0.5, OpenCSG 1.4.2, OpenSCAD 2015.03-2, geos 3.6.0, gdal 2.1.1, Proj.4 4.9.3, Stacks 0.44, Popoolation 1.2.2, Popoolation2 1201, Samtools 1.3.1, bedtools 2.26.0, Bowtie 1.1.2, Picard 2.7.1, Julia 0.5.0, Perl 5.24.0
2016-10-17 Molden 5.7, SAGE 7.3
2016-09-15 Mathematica 11.0.0, GCC 6.2.0, GSL 2.2.1, OpenMPI 2.0.1, GMP 6.1.1, NumPy 1.11.1, SciPy 0.18.0, Cython 0.24.1, ASE 3.11.0, GPAW 1.1.0, LAMMPS+GPU, Gromacs 2016+GPU, gnuplot 5.0.4, Simpy 3.0.10, MoviePy 0.2.2.11
2016-06-23 Lapack 3.6.0, Go 1.6.2, mumax^3 3.9.1, latgen 1.50, CGAL 4.8, OpenEMS 0.0.34, Caffe 1.0rc3
2016-05-13 tricubic 1.0, Spglib 1.9.2, COMSOL 3.4
2016-04-28 SciPy 0.17.0, NumPy 1.10.4, Atlas 3.11.38, OpenBLAS 0.2.17, ASE 3.10.0, GPAW 1.0.0, TRNG 4.19, Matplotlib 1.5.1, GMP 6.1.0, MPFR 3.1.4, GCC 6.1.0, Matlab 2016a, SCUFF-EM 20160428
2016-03-30 Quantum Espresso 5.3.0, LAMMPS 16Feb16, CP2K 3.0, HDF5 1.8.16, Atompaw 4.0.0.13, BigDFT 1.7.7
2016-03-10 Mathematica 10.4.0, Gromacs 5.0.7&5.1.2, hwloc 1.11.2, armadillo 6.500.5, CUDA 7.5, Splash 2.6.0
2016-03-04 GCC 5.3, OpenMPI 1.10.2, abinit 7.10.5, BerkeleyGW 1.1-beta2, Wannier90 2.0.1, PGI 16.1
2016-01-19 Mathematica 10.3.1, Matlab 2015b, MEEP 1.3, MPB 1.5, Gnuplot 5.0.1, XZ 5.2.2

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